The Ding Lab Handbook

This handbook serves as a guide for conducting research in the Ding Lab. It contains logistics, instructions, and tutorials.

• Cluster Account
• Linux commands
• Text Editors
• Computing on Cluster
• Python environment
• Getting Help
• OpenMM 101
• Linear Regression using JAX
• Compute the Hydration Energy of Benzene Using An Implicit Solvent Model
• Sample from probability distributions